miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|294701296|gb|GW785161.1|GW785161 TAGAGTTACACAATCAATGGCCTCATGACACCGTGGAATTAAGGGAGTCTTGTGAAAAGTATGTTAAAGATGTGCAAGAA
CTAGCTTACAAGTTATTGGAATTGATCTCTTTGAGCTTGAACCTCCCCGCAAACCGGTTTAAGCCATTTTTCAAGGACCA
AACCACTTTCGTTCGGCTCAATCACTACCCACCGTGTCTCGCACCAGAATTAGCCCTTGGTGTCGGTCGACACAGGGATG
CCGGTGCTTTAACCATCTTGGCTCAAGACGCTGTAGGTGGTTTAGAAGTTAAACGAAAAACCGATGGAGAGTGGATCTTT
GTCAAGCCTACACCAAATGCTTTCATTATAAATGTTGGGGACCTTATTCAGGTATGGAGCAATGATACATATGAGAGTGT
AGAGCACAGGGTGAGAGTGAACTCTACTAGAGAAAGGTTTTCAATACCATTTTTTATGAACCCTGCACATTATACGGTGG
TGGAGCCGCTAGCGGAGTTGACGAATGAACATAATCCGGCCAAATACAAGGGCTACAACTGGGGCAAGTTCTTTTCAACT
CGGAAGCATCAAAACTTCAAGAAACTTGATGTCGAAAACATACAGATATATCATTTCACACAGCCCGAAGAGCGGAGAAT
TGATGATGTTGTATCCCATGTCGCGAATATTGTTATGTAGGTAAGAAAAAGACTATGTTATCTTTTCATGTACCAAA




Most similar to sp|D4N501|DIOX2_PAPSO

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|D4N501|DIOX2_PAPSO Probable 2-oxoglutarate/Fe(II)-dependent
           dioxygenase OS=Papaver somniferum GN=DIOX2 PE=2 SV=1
          Length = 364

 Score =  130 bits (326), Expect = 1e-29
 Identities = 79/207 (38%), Positives = 115/207 (55%), Gaps = 12/207 (5%)
 Frame = +3

Query: 6   LHNQWPHD----TVELRESCEKYVKDVQEXXXXXXXXXXXXXXXPANRFKPF---FKDQT 164
           LH + PH      + LRE+ E Y  ++++                A   K     FKD T
Sbjct: 156 LHLRKPHLFSKLPLPLRETIESYSSEMKKLSMVLFEKMEKALQVQAVEIKEISEVFKDMT 215

Query: 165 TFVRLNHYPPCLAPELALGVGRHRDAGALTILAQ-DAVGGLEVKRKTDGEWIFVKPTPNA 341
             +R+N+YPPC  PELA+G+  H D G LTIL Q + V GL++K   +G WI VKP PNA
Sbjct: 216 QVMRMNYYPPCPQPELAIGLTPHSDFGGLTILLQLNEVEGLQIKN--EGRWISVKPLPNA 273

Query: 342 FIINVGDLIQVWSNDTYESVEHRVRVNSTRERFSIPFFMNPAHYTVVEPLAELTNEHNPA 521
           F++NVGD++++ +N  Y SV+HR  VNST+ER SI  F +P   + + P++ L   + PA
Sbjct: 274 FVVNVGDVLEIMTNGMYRSVDHRAVVNSTKERLSIATFHDPNLESEIGPISSLITPNTPA 333

Query: 522 KYK-GYNWGKF---FSTRKHQNFKKLD 590
            ++ G  +G+    F +RK      LD
Sbjct: 334 LFRSGSTYGELVEEFHSRKLDGKSFLD 360